pyPESTO

python Parameter EStimation TOolbox

Widely applicable and highly customizable toolbox for parameter estimation
ICB-DCM/pyPESTO
Fides

Reliable Trust-Region Optimization

Trust-Region Optimization featuring various Hessian approximation schemes
fides-dev/fides
AMICI

Advanced Multilanguage Interface to CVODES and IDAS

High performance ordinary differential equation solver for simulation and sensitivity computation
AMICI-dev/AMICI
PEtab

Parameter Estimation using tab-separated values files

Data format for specifying parameter estimation problems in systems biology.
PEtab-dev/PEtab